{ "_id": "6a59df7509eb0996dd68ef14", "Package": "measles", "Type": "Package", "Title": "Measles Epidemiological Models", "Version": "0.3.2-0", "Authors@R": "c(\nperson(given=\"George\", family=\"Vega Yon\", role=c(\"aut\", \"cre\"),\nemail=\"g.vegayon@gmail.com\", comment = c(ORCID = \"0000-0002-3171-0844\")),\nperson(\n\"Damon\", \"Toth\", email = \"damon.toth@hsc.utah.edu\", role = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0001-7393-4814\")\n),\nperson(\n\"Jake\", \"Wagoner\", email = \"jakew@sci.utah.edu\", role = c(\"ctb\"),\ncomment = c(ORCID = \"0009-0000-5053-2281\")\n),\nperson(\n\"Olivia\", \"Banks\", email = \"olivia.banks@utah.edu\", role = c(\"ctb\"),\ncomment = c(ORCID = \"0009-0008-7611-6030\")\n),\nperson(\"Centers for Disease Control and Prevention\", role=\"fnd\", comment = \"Award number 1U01CK000585; 75D30121F00003\"\n))", "Description": "A specialized collection of measles epidemiological models\nbuilt on the 'epiworldR' framework. This package is a spinoff\nfrom 'epiworldR' focusing specifically on measles transmission\ndynamics. It includes models for school settings with\nquarantine and isolation policies, mixing models with\npopulation groups, and risk-based quarantine strategies. The\nmodels use Agent-Based Models (ABM) with a fast 'C++' backend\nfrom the 'epiworld' library. Ideal for studying measles\noutbreaks, vaccination strategies, and intervention policies.", "URL": "https://github.com/UofUEpiBio/measles", "BugReports": "https://github.com/UofUEpiBio/measles/issues", "License": "MIT + file LICENSE", "RoxygenNote": "7.3.3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "SystemRequirements": "C++17", "VignetteBuilder": "quarto", "LazyData": "true", "Remotes": [ "UofUEpiBio/epiworldR" ], "Repository": "https://uofuepibio.r-universe.dev", "Date/Publication": "2026-07-17 07:20:17 UTC", "RemoteUrl": "https://github.com/UofUEpiBio/measles", "RemoteRef": "HEAD", "RemoteSha": "0c27228aa69f07df90d00334927b0abe040af2d5", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-07-17 07:46:02 UTC", "User": "root" }, "Author": "George Vega Yon [aut, cre] (ORCID:\n),\nDamon Toth [ctb] (ORCID: ),\nJake Wagoner [ctb] (ORCID: ),\nOlivia Banks [ctb] (ORCID: ),\nCenters for Disease Control and Prevention [fnd] (Award number\n1U01CK000585; 75D30121F00003)", "Maintainer": "George Vega Yon ", "_user": "uofuepibio", "_type": "src", "_file": "measles_0.3.2-0.tar.gz", "_fileid": "https://r2.ropensci.org/a84f213f6412017d0ff322cc75a128f83e9409d786cdfac72bbe31c4b5262169", "_filesize": 1783083, "_sha256": "a84f213f6412017d0ff322cc75a128f83e9409d786cdfac72bbe31c4b5262169", "_expires": "2026-10-25T07:53:19.000Z", "_created": "2026-07-17T07:46:02.000Z", "_published": "2026-07-17T07:53:25.199Z", "_jobs": [ { "job": 87832922828, "time": 183, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "8400497604" }, { "job": 87832922824, "time": 169, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8400491482" }, { "job": 87832922849, "time": 178, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8400495791" }, { "job": 87832922803, "time": 179, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8400494737" }, { "job": 87832922819, "time": 191, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8400498894" }, { "job": 87832922842, "time": 289, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "8400532437" }, { "job": 87832922837, "time": 227, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8400510737" }, { "job": 87832922848, "time": 386, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8400566223" }, { "job": 87831953373, "time": 338, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8400431100" }, { "job": 87832922790, "time": 208, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8400505261" }, { "job": 87832922791, "time": 182, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8400496492" }, { "job": 87832922839, "time": 191, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8400498978" }, { "job": 87832922810, "time": 180, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8400495191" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/uofuepibio/actions/runs/29563837352", "_status": "success", "_upstream": "https://github.com/UofUEpiBio/measles", "_commit": { "id": "0c27228aa69f07df90d00334927b0abe040af2d5", "author": "George G. Vega Yon ", "committer": "GitHub ", "message": "Adding functionality in ModelMeaslesMixing to allow agents with Rash to infect others (#47)\n\n* Adding the new functionality for rash contacts, including tests, and documentation\n\n* Further adding information into the R0\n\n* Updating the shortcreek data\n\n* Adding the make_cmat_symmetric\n\n* Fixing vaccine distribution\n\n* Updating latest version\n\n* Defer contact matrix accessors to epiworldR (>= 0.15.1)\n\nepiworldR 0.15.1 now provides get_contact_matrix()/set_contact_matrix(),\nwhich work directly on the measles model classes. measles-pkg's own copies\nmasked epiworldR's versions and broke get_contact_matrix() on epiworldR\nmixing models. Remove the duplicate R generics, C++ bindings, S3 methods,\nNAMESPACE exports, and docs; keep a focused integration test verifying\nmeasles models round-trip through epiworldR's accessors.\n\nAlso bump the epiworldR dependency (Depends + LinkingTo) from the stale\n0.14.99.99 pre-release pin to 0.15.1, the released version whose core\nprovides the ContactMatrix class the vendored headers require.\n\nCo-Authored-By: Claude Fable 5 \n\n* Address Copilot review comments (make_cmat_symmetric, docs)\n\n- make_cmat_symmetric(): validate that cmat is numeric and that pop is\n finite and positive (it is used as a divisor), and add a tinytest file\n covering the reciprocity condition and input validation.\n- Fix roxygen typo \"achieve\" -> \"achieved\" in make_cmat_symmetric().\n- Reword the rash calibration docs (ModelMeaslesMixing, calibrate_mixing_model,\n short-creek vignette) to use \"scaled by (1 - rash_reduction_contact_rate)\"\n so the text matches the R0 formula and the \"3 * (1 - 0.8)\" example; fix\n typo \"discouted\" -> \"discounted\".\n- Fix NEWS typo: socialmixr::symmatrize() -> socialmixr::symmetrise().\n\nRd files edited by hand to match roxygen sources (local roxygen2 differs\nfrom the pinned RoxygenNote, so a full re-document would churn unrelated\nfiles).\n\nCo-Authored-By: Claude Fable 5 \n\n---------\n\nCo-authored-by:", "time": 1784272817 }, "_maintainer": { "name": "George Vega Yon", "email": "g.vegayon@gmail.com", "login": "gvegayon", "bluesky": "@gvegayon.bsky.social", "linkedin": "in/georgevegayon", "description": "Scientist at @UofUEpiBio modeling complex systems using statistical computing. 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