Package: epiworldR 0.3-2

Derek Meyer

epiworldR: Fast Agent-Based Epi Models

A flexible framework for Agent-Based Models (ABM), the 'epiworldR' package provides methods for prototyping disease outbreaks and transmission models using a 'C++' backend, making it very fast. It supports multiple epidemiological models, including the Susceptible-Infected-Susceptible (SIS), Susceptible-Infected-Removed (SIR), Susceptible-Exposed-Infected-Removed (SEIR), and others, involving arbitrary mitigation policies and multiple-disease models. Users can specify infectiousness/susceptibility rates as a function of agents' features, providing great complexity for the model dynamics. Furthermore, 'epiworldR' is ideal for simulation studies featuring large populations.

Authors:Derek Meyer [aut, cre], George Vega Yon [aut], Susan Holmes [rev], Abinash Satapathy [rev], Carinogurjao [rev], Centers for Disease Control and Prevention [fnd]

epiworldR_0.3-2.tar.gz
epiworldR_0.3-2.zip(r-4.5)epiworldR_0.3-2.zip(r-4.4)epiworldR_0.3-2.zip(r-4.3)
epiworldR_0.3-2.tgz(r-4.4-x86_64)epiworldR_0.3-2.tgz(r-4.4-arm64)epiworldR_0.3-2.tgz(r-4.3-x86_64)epiworldR_0.3-2.tgz(r-4.3-arm64)
epiworldR_0.3-2.tar.gz(r-4.5-noble)epiworldR_0.3-2.tar.gz(r-4.4-noble)
epiworldR_0.3-2.tgz(r-4.4-emscripten)epiworldR_0.3-2.tgz(r-4.3-emscripten)
epiworldR.pdf |epiworldR.html✨
epiworldR/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/uofuepibio/epiworldr/issues

On CRAN:

abmagent-based-modelingcovid-19epidemicsepidemiologyr-programmingrpackrpkgseirseir-modelsimulationsirsir-model

129 exports 6 stars 2.28 score 1 dependencies 1 dependents 51 scripts 303 downloads

Last updated 2 months agofrom:b1fd9a9339. Checks:OK: 1 NOTE: 8. Indexed: yes.

Exports:add_entityadd_globaleventadd_tooladd_tool_agentadd_tool_nadd_virusadd_virus_agentadd_virus_nagents_from_edgelistagents_smallworldchange_stateclone_modeldistribute_entity_randomlydistribute_entity_to_setdistribute_tool_randomlydistribute_tool_to_setdistribute_virus_randomlydistribute_virus_setentityentity_add_agententity_get_agentsget_agentsget_agents_data_ncolsget_agents_statesget_agents_toolsget_entitiesget_entity_nameget_entity_sizeget_generation_timeget_hist_toolget_hist_totalget_hist_transition_matrixget_hist_virusget_n_replicatesget_n_toolsget_n_virusesget_nameget_name_toolget_name_virusget_ndaysget_networkget_paramget_reproductive_numberget_stateget_statesget_today_totalget_toolget_transition_probabilityget_transmissionsget_virusglobalaction_funglobalaction_set_paramsglobalaction_toolglobalaction_tool_logitglobalevent_funglobalevent_set_paramsglobalevent_toolglobalevent_tool_logithas_toolhas_virusinitial_statesload_agents_entities_tiesmake_saverModelDiffNetModelSEIRModelSEIRCONNModelSEIRDModelSEIRDCONNModelSEIRMixingModelSIRModelSIRCONNModelSIRDModelSIRDCONNModelSIRLogitModelSIRMixingModelSISModelSISDModelSURVplot_generation_timeplot_incidenceplot_reproductive_numberqueuing_offqueuing_onrm_entityrm_toolrm_virusrunrun_multiplerun_multiple_get_resultsset_agents_dataset_death_reductionset_death_reduction_funset_death_reduction_ptrset_distribution_entityset_distribution_toolset_distribution_virusset_incubationset_incubation_funset_incubation_ptrset_nameset_name_toolset_name_virusset_paramset_prob_deathset_prob_death_funset_prob_death_ptrset_prob_infectingset_prob_infecting_funset_prob_infecting_ptrset_prob_recoveryset_prob_recovery_funset_prob_recovery_ptrset_recovery_enhancerset_recovery_enhancer_funset_recovery_enhancer_ptrset_susceptibility_reductionset_susceptibility_reduction_funset_susceptibility_reduction_ptrset_transmission_reductionset_transmission_reduction_funset_transmission_reduction_ptrsizetooltool_fun_logitverbose_offverbose_onvirusvirus_fun_logitvirus_set_state

Dependencies:cpp11