Package: measles 0.3.1-0
George Vega Yon
measles: Measles Epidemiological Models
A specialized collection of measles epidemiological models built on the 'epiworldR' framework. This package is a spinoff from 'epiworldR' focusing specifically on measles transmission dynamics. It includes models for school settings with quarantine and isolation policies, mixing models with population groups, and risk-based quarantine strategies. The models use Agent-Based Models (ABM) with a fast 'C++' backend from the 'epiworld' library. Ideal for studying measles outbreaks, vaccination strategies, and intervention policies.
Authors:
measles_0.3.1-0.tar.gz
measles_0.3.1-0.zip(r-4.7)measles_0.3.1-0.zip(r-4.6)measles_0.3.1-0.zip(r-4.5)
measles_0.3.1-0.tgz(r-4.6-x86_64)measles_0.3.1-0.tgz(r-4.6-arm64)measles_0.3.1-0.tgz(r-4.5-x86_64)measles_0.3.1-0.tgz(r-4.5-arm64)
measles_0.3.1-0.tar.gz(r-4.7-arm64)measles_0.3.1-0.tar.gz(r-4.7-x86_64)measles_0.3.1-0.tar.gz(r-4.6-arm64)measles_0.3.1-0.tar.gz(r-4.6-x86_64)
measles_0.3.1-0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
measles/json (API)
NEWS
| # Install 'measles' in R: |
| install.packages('measles', repos = c('https://uofuepibio.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/uofuepibio/measles/issues
- short_creek - Short Creek Population Data by Age Group
- short_creek_matrix - Short Creek Mixing Matrix
abmagent-based-modelingepidemiologyindividual-based-modellingmeaslesmeasles-mumps-rubella-vacciner-programmingsimulationquartocpp
Last updated from:8b6d10f20c. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 140 | ||
| linux-devel-x86_64 | OK | 150 | ||
| source / vignettes | OK | 314 | ||
| linux-release-arm64 | OK | 152 | ||
| linux-release-x86_64 | OK | 160 | ||
| macos-release-arm64 | OK | 147 | ||
| macos-release-x86_64 | OK | 211 | ||
| macos-oldrel-arm64 | OK | 184 | ||
| macos-oldrel-x86_64 | OK | 224 | ||
| windows-devel | OK | 213 | ||
| windows-release | OK | 207 | ||
| windows-oldrel | OK | 215 | ||
| wasm-release | OK | 126 |
Exports:calibrate_mixing_modelget_contact_matrixInterventionMeaslesPEPmeasles_cpp_versionModelMeaslesMixingModelMeaslesMixingRiskQuarantineModelMeaslesQuarantineModelMeaslesSchoolset_contact_matrix
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calibrate a mixing model to a target reproduction number | calibrate_mixing_model |
| Get and Set Contact Matrix | contact_matrix get_contact_matrix get_contact_matrix.default get_contact_matrix.epiworld_measlesmixing get_contact_matrix.epiworld_measlesmixingriskquarantine set_contact_matrix set_contact_matrix.default set_contact_matrix.epiworld_measlesmixing set_contact_matrix.epiworld_measlesmixingriskquarantine |
| Create a measles post-exposure prophylaxis (PEP) intervention | InterventionMeaslesPEP |
| Measles model with mixing | epiworld_measlesmixing ModelMeaslesMixing |
| Measles model with mixing and risk-based quarantine | epiworld_measlesmixingriskquarantine ModelMeaslesMixingRiskQuarantine |
| Measles model with quarantine | epiworld_measlesschool ModelMeaslesQuarantine ModelMeaslesSchool |
| Short Creek Population Data by Age Group | short_creek |
| Short Creek Mixing Matrix | short_creek_matrix |
